Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909984.1_cds_XP_016460076.1_53533
CDS Infomation

[gene=LOC107783607] [db_xref=GeneID:107783607] [protein=U-box domain-containing protein 38-like isoform X2] [protein_id=XP_016460076.1] [location=complement(join(72187..72362,72396..73872))] [gbkey=CDS]
Sequence

ATGTATTCCCCTTTCAGAAAAGTTAAAGGGGAAATGGGTGGTGGACATAGTAAATCTAAA
TGGAAAATCTTCATTTACAGGTCGTCTTCTTCTTCCTCCAAATTCGATAAAAAGGATCCT
CCAAAAGAACTCCTCTGTCCCATTTATGGATCTCTGATGTATGATCCAGTGGTGGTGTCT
TCCGGCCAAACTTTCGAGCGCACTTCTGTTCAAGTCTGTAAAGATTTAGGGTTTAAACCC
CAACTTCCCAACGGCTCAAGCCCTGATTTCTCTACCGTGATTCCTAATTTAGCTTTGAGG
ACGACGATTCTCAGCTGGTGTGAAAAGTCTGGAGCGGAGAAGCCTCAGCCACCCGATTAT
TACGCCGTCGAGTCCACTGTCCGCACTCTAATGCCTTCTTCTTCTGTTTCGACCACCAAA
GAAGATCCCAGAATACGAGTTTCAGAGAGGGAGTTGCTTAAAAGCGTAGCGGAGAATCCA
CCTGTGCTCTTATCTCACGCCGCCTCTGAACTGACCCCAAGGAATAATCATCATTTTTAC
TCTCCTTCGAGCTCAGAAGAATCTGTCATCGCTAACAACTCGCCGCTGCTCCCTTTTACT
ACTCGTCCCTCCTGTTATTCCTCTTCGTCGTCGCAATCGACTTCGTCGGAAATTATAGTA
TCCGATGATGTCCCGTCCTCTGCTTCCACGTCATCCGAAGATGATTATTACGTTGTACAG
TTCAAGAAATTAGACGTTTATGACCAGGAACAAGCTGTAATTTCACTGAGAAAAAGCACC
AGAACAGATGAGGAAGCTAGGGTTTCACTGTGCACGCCGCGGCTTTTATCGGCTCTGAAG
CCGCTGATGGTCTCGAGGTACGCCGGGATTCAGACGAACGCCGTCGCCTCATTGGTCAAC
CTCTCGCTGGCGGAAGTCAACAAAGTGAAAATCGTTAGGTCAGGGATTACTCCTATGCTA
ATTGATGTTTTGAAAGGCGGCTTCGAGGAGTCTCAGGAGCATGCAGCCGGCGCCATATTC
AGCTTGGCGCTGGAAGATGACAACAAGACGGCGATTGGAGTGTTAGGCGCGTTGCAGCCG
CTTTTACACGCGCTGAGGTCGGGGACCGAGCGGACTCGTCATGATTCAGCATTGGCCCTT
TATCATTTAACCTTGGTGCAAAGTAACCGGGCTAAGCTCATTAAACTCGGAGCCGCGAGT
ACGCTTCTGGGAATGCTGAAATCCGGCGATATGGCGGGTCGGCTGGTGTTGGTATTGTGC
AATTTGGCGGTGTGTCAAGAGGGGAAAACGGCGTTACTGGACGCCAACGCGGTGGAGGTA
CTATTGGGGATACTGAGAAAGGGGAGTGAGTTAGATGAGTCAACTCGGGAGAATTGCGTG
GCGGCTCTTTACTCACTGAGTCATGGTAGTTTGAGGTTTAAGGGGTTGGCGAAAGAGGCG
AAGGCGGCAGAAATATTGCAGACGGTGGTGGAGAGAGGGAGCGAGCGGGCGAGGGAGAAA
GCAAAGAGGATGTTGATTTCCATGCGAGGAAGGTACAAGGAGGATGATGACGAAGAAGAG
GTAGATTGGGAGGGAGTATTGGAAGGACGAGTGAGTCAAACTCGGTACCGAGTTGGAAGA
ACTACTCACAATCTCAACTCAACCGAGTTCTGA

Peptide Sequence

PEP ID

XP_016460076.1
PEP Infomation

PREDICTED: U-box domain-containing protein 38-like isoform X2 [Nicotiana tabacum]
Sequence

MYSPFRKVKGEMGGGHSKSKWKIFIYRSSSSSSKFDKKDPPKELLCPIYGSLMYDPVVVS
SGQTFERTSVQVCKDLGFKPQLPNGSSPDFSTVIPNLALRTTILSWCEKSGAEKPQPPDY
YAVESTVRTLMPSSSVSTTKEDPRIRVSERELLKSVAENPPVLLSHAASELTPRNNHHFY
SPSSSEESVIANNSPLLPFTTRPSCYSSSSSQSTSSEIIVSDDVPSSASTSSEDDYYVVQ
FKKLDVYDQEQAVISLRKSTRTDEEARVSLCTPRLLSALKPLMVSRYAGIQTNAVASLVN
LSLAEVNKVKIVRSGITPMLIDVLKGGFEESQEHAAGAIFSLALEDDNKTAIGVLGALQP
LLHALRSGTERTRHDSALALYHLTLVQSNRAKLIKLGAASTLLGMLKSGDMAGRLVLVLC
NLAVCQEGKTALLDANAVEVLLGILRKGSELDESTRENCVAALYSLSHGSLRFKGLAKEA
KAAEILQTVVERGSERAREKAKRMLISMRGRYKEDDDEEEVDWEGVLEGRVSQTRYRVGR
TTHNLNSTEF

Transcript Sequence

Gene sequence data has not been registered.